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    The utility of porous graphitic carbon as a stationary phase in proteomics workflows: Two-dimensional chromatography of complex peptide samples.

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    Authors
    Griffiths, John R
    Perkins, Simon
    Connolly, Yvonne
    Zhang, Lu
    Holland, Mark
    Barattini, V
    Pereira, L
    Edge, A
    Ritchie, H
    Smith, Duncan L
    Affiliation
    Paterson Institute for Cancer Research, University of Manchester, Wilmslow Road, Manchester, UK.
    Issue Date
    2012-04-06
    
    Metadata
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    Abstract
    We present the first investigation into the utility of porous graphitic carbon (PGC) as a stationary phase in proteomic workflows involving complex samples. PGC offers chemical and physical robustness and is capable of withstanding extremes of pH and higher temperatures than traditional stationary phases, without the likelihood of catastrophic failure. In addition, unlike separations driven by ion exchange mechanisms, there is no requirement for high levels of non-volatile salts such as potassium chloride in the elution buffers, which must be removed prior to LC-MS analysis. Here we present data which demonstrate that PGC affords excellent peptide separation in a complex whole cell lysate digest sample, with good orthogonality to a typical low pH reversed-phase system. As strong cation exchange (SCX) is currently the most popular first dimension for 2D peptide separations, we chose to compare the performance of a PGC and SCX separation as the first dimension in a comprehensive 2D-LC-MS/MS workflow. A significant increase, in the region of 40%, in peptide identifications is reported with off-line PGC fractionation compared to SCX. Around 14,000 unique peptides were identified at an estimated false discovery rate of 1% (n=3 replicates) from starting material constituting only 100μg of protein extract.
    Citation
    The utility of porous graphitic carbon as a stationary phase in proteomics workflows: Two-dimensional chromatography of complex peptide samples. 2012, 1232:276-80 J Chromatogr A
    Journal
    Journal of Chromatography
    URI
    http://hdl.handle.net/10541/227793
    DOI
    10.1016/j.chroma.2012.01.015
    PubMed ID
    22326183
    Type
    Article
    Language
    en
    ISSN
    1873-3778
    ae974a485f413a2113503eed53cd6c53
    10.1016/j.chroma.2012.01.015
    Scopus Count
    Collections
    All Paterson Institute for Cancer Research

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