Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis.

2.50
Hdl Handle:
http://hdl.handle.net/10541/75639
Title:
Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis.
Authors:
Wilson, Claire L; Miller, Crispin J
Abstract:
SUMMARY: Quality Control is a fundamental aspect of successful microarray data analysis. Simpleaffy is a BioConductor package that provides access to a variety of QC metrics for assessing the quality of RNA samples and of the intermediate stages of sample preparation and hybridization. Simpleaffy also offers fast implementations of popular algorithms for generating expression summaries and detection calls. AVAILABILITY: Simpleaffy can be downloaded from http://www.bioconductor.org. SUPPLEMENTARY INFORMATION: Additional information can be found on the supplementary website located at http://bioinformatics.picr.man.ac.uk.
Affiliation:
Paterson Institute for Cancer Research, Manchester M20 4BX, UK.
Citation:
Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis. 2005, 21 (18):3683-5 Bioinformatics
Journal:
Bioinformatics
Issue Date:
15-Sep-2005
URI:
http://hdl.handle.net/10541/75639
DOI:
10.1093/bioinformatics/bti605
PubMed ID:
16076888
Type:
Article
Language:
en
ISSN:
1367-4803
Appears in Collections:
All Paterson Institute for Cancer Research

Full metadata record

DC FieldValue Language
dc.contributor.authorWilson, Claire L-
dc.contributor.authorMiller, Crispin J-
dc.date.accessioned2009-07-24T15:42:48Z-
dc.date.available2009-07-24T15:42:48Z-
dc.date.issued2005-09-15-
dc.identifier.citationSimpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis. 2005, 21 (18):3683-5 Bioinformaticsen
dc.identifier.issn1367-4803-
dc.identifier.pmid16076888-
dc.identifier.doi10.1093/bioinformatics/bti605-
dc.identifier.urihttp://hdl.handle.net/10541/75639-
dc.description.abstractSUMMARY: Quality Control is a fundamental aspect of successful microarray data analysis. Simpleaffy is a BioConductor package that provides access to a variety of QC metrics for assessing the quality of RNA samples and of the intermediate stages of sample preparation and hybridization. Simpleaffy also offers fast implementations of popular algorithms for generating expression summaries and detection calls. AVAILABILITY: Simpleaffy can be downloaded from http://www.bioconductor.org. SUPPLEMENTARY INFORMATION: Additional information can be found on the supplementary website located at http://bioinformatics.picr.man.ac.uk.en
dc.language.isoenen
dc.subject.meshComputational Biology-
dc.subject.meshComputer Graphics-
dc.subject.meshComputer Simulation-
dc.subject.meshDatabase Management Systems-
dc.subject.meshGene Expression Profiling-
dc.subject.meshHumans-
dc.subject.meshInformation Storage and Retrieval-
dc.subject.meshInternet-
dc.subject.meshNucleic Acid Hybridization-
dc.subject.meshOligonucleotide Array Sequence Analysis-
dc.subject.meshQuality Control-
dc.subject.meshRNA-
dc.subject.meshSequence Analysis, DNA-
dc.subject.meshSoftware-
dc.subject.meshStatistics as Topic-
dc.subject.meshUser-Computer Interface-
dc.titleSimpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis.en
dc.typeArticleen
dc.contributor.departmentPaterson Institute for Cancer Research, Manchester M20 4BX, UK.en
dc.identifier.journalBioinformaticsen

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